De novo assembly, transcriptome characterization, and simple sequence repeat marker development in duckweed Lemna gibba
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چکیده
منابع مشابه
De novo assembly and characterization of the root transcriptome and development of simple sequence repeat markers in Paphiopedilum concolor.
Paphiopedilum orchids (Orchidaceae) have attracted much attention from botanists and horticulturists because of their peculiar leaves and beautiful flowers. Furthermore, the dry roots of Paphiopedilum plants have well-known medicinal uses. However, it is unknown how sensitive and plastic the root genes are to environmental changes or how these environmental changes regulate the biosynthesis of ...
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Pummelo (Citrus grandis) is an important fruit crop worldwide because of its nutritional value. To accelerate the pummelo breeding program, it is essential to obtain extensive genetic information and develop relative molecular markers. Here, we obtained a 12-Gb transcriptome dataset of pummelo through a mixture of RNA from seven tissues using Illumina pair-end sequencing, assembled into 57,212 ...
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Given the importance of transcriptome analysis in various biological studies and considering thevast amount of whole transcriptome sequencing data, it seems necessary to develop analgorithm to assemble transcriptome data. In this study we propose an algorithm fortranscriptome assembly in the absence of a reference genome. First, the contiguous sequencesare generated using de Bruijn graph with d...
متن کاملUptake and transformation of phenols by duckweed (Lemna gibba)
Phenol and its derivatives are common constituents of numerous natural and synthetic chemicals including pesticides. As a consequence of anthropological activities, a portion of them may reach various water bodies as contaminants which will have a great impact on the aquatic environment including biota. Aquatic plants are known to be one of the major habitants and food for many species and henc...
متن کاملGrowth response of Lemna gibba L. (duckweed) to copper and nickel phytoaccumulation Effet de l’accumulation de Cu et Ni sur la croissance de Lemna gibba L. (lentilles d’eau)
To assess the tolerance and phytoaccumulation ability of the duckweed Lemna gibba L. to copper (Cu) and nickel (Ni), the aquatic plants were exposed to different concentrations of Cu and Ni (0.1 – 2.0 mg/L) in quarter Coïc and Lesaint solution at pH = 6.0 (± 0.1) and under a daily regime of 12 h light. Copper and nickel were tolerated by L. gibba at concentrations ≤ 0.3 mg/L and ≤ 0.5 mg/L, res...
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ژورنال
عنوان ژورنال: Physiology and Molecular Biology of Plants
سال: 2019
ISSN: 0971-5894,0974-0430
DOI: 10.1007/s12298-019-00726-9